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Side-by-side financial comparison of Protagonist Therapeutics, Inc (PTGX) and Stoke Therapeutics, Inc. (STOK). Click either name above to swap in a different company.

Protagonist Therapeutics, Inc is the larger business by last-quarter revenue ($170.6M vs $158.6M, roughly 1.1× Stoke Therapeutics, Inc.). Protagonist Therapeutics, Inc runs the higher net margin — 77.2% vs 71.2%, a 6.0% gap on every dollar of revenue. On growth, Stoke Therapeutics, Inc. posted the faster year-over-year revenue change (3661.1% vs 184.4%). Protagonist Therapeutics, Inc produced more free cash flow last quarter ($182.8M vs $131.7M).

Protagonist Therapeutics, Inc. is a clinical-stage biopharmaceutical company focused on discovering and developing novel peptide-based targeted therapies for unmet medical needs, primarily covering gastrointestinal disorders, inflammatory diseases and rare disease indications. Its lead product candidates target inflammatory bowel disease and other chronic immune-related conditions, with operations spanning global R&D and partnership collaborations.

Stoke Therapeutics, Inc. is a clinical-stage biotechnology company developing innovative RNA-targeted therapies for severe rare genetic diseases. Its lead candidates address unmet needs for Dravet syndrome, a rare epilepsy, and other neurological monogenic disorders, serving patients across North America and global markets.

PTGX vs STOK — Head-to-Head

Bigger by revenue
PTGX
PTGX
1.1× larger
PTGX
$170.6M
$158.6M
STOK
Growing faster (revenue YoY)
STOK
STOK
+3476.7% gap
STOK
3661.1%
184.4%
PTGX
Higher net margin
PTGX
PTGX
6.0% more per $
PTGX
77.2%
71.2%
STOK
More free cash flow
PTGX
PTGX
$51.1M more FCF
PTGX
$182.8M
$131.7M
STOK

Income Statement — Q4 FY2024 vs Q1 FY2025

Metric
PTGX
PTGX
STOK
STOK
Revenue
$170.6M
$158.6M
Net Profit
$131.7M
$112.9M
Gross Margin
Operating Margin
74.3%
70.2%
Net Margin
77.2%
71.2%
Revenue YoY
184.4%
3661.1%
Net Profit YoY
381.7%
528.0%
EPS (diluted)
$2.01
$1.90

Green = leading value per metric. Periods may differ when fiscal calendars don't align.

8-Quarter Revenue & Profit Trend

Side-by-side quarterly history. Quarters aligned by calendar period so offset fiscal years line up.

Revenue
PTGX
PTGX
STOK
STOK
Q1 25
$158.6M
Q4 24
$170.6M
$22.6M
Q1 24
$255.0M
Q3 23
$0
Q2 23
$0
$-2.5M
Q1 23
$0
Q4 22
$0
Q3 22
$0
Net Profit
PTGX
PTGX
STOK
STOK
Q1 25
$112.9M
Q4 24
$131.7M
$-10.5M
Q1 24
$207.3M
Q3 23
$-34.1M
Q2 23
$-38.5M
$-30.7M
Q1 23
$-33.7M
Q4 22
Q3 22
$-31.2M
Operating Margin
PTGX
PTGX
STOK
STOK
Q1 25
70.2%
Q4 24
74.3%
-60.4%
Q1 24
80.9%
Q3 23
Q2 23
1340.7%
Q1 23
Q4 22
Q3 22
Net Margin
PTGX
PTGX
STOK
STOK
Q1 25
71.2%
Q4 24
77.2%
-46.4%
Q1 24
81.3%
Q3 23
Q2 23
1235.6%
Q1 23
Q4 22
Q3 22
EPS (diluted)
PTGX
PTGX
STOK
STOK
Q1 25
$1.90
Q4 24
$2.01
$-0.15
Q1 24
$3.26
Q3 23
$-0.58
Q2 23
$-0.68
$-0.69
Q1 23
$-0.67
Q4 22
Q3 22
$-0.64

Balance Sheet & Financial Strength

Snapshot of each company's liquidity, leverage and book value from the latest quarter.

Metric
PTGX
PTGX
STOK
STOK
Cash + ST InvestmentsLiquidity on hand
$418.9M
$274.8M
Total DebtLower is stronger
Stockholders' EquityBook value
$675.3M
$350.1M
Total Assets
$744.7M
$406.9M
Debt / EquityLower = less leverage

8-quarter trend — quarters aligned by calendar period.

Cash + ST Investments
PTGX
PTGX
STOK
STOK
Q1 25
$274.8M
Q4 24
$418.9M
$128.0M
Q1 24
$322.6M
Q3 23
$320.8M
Q2 23
$313.4M
$192.1M
Q1 23
$230.8M
Q4 22
$237.4M
Q3 22
$267.4M
Stockholders' Equity
PTGX
PTGX
STOK
STOK
Q1 25
$350.1M
Q4 24
$675.3M
$229.0M
Q1 24
$560.4M
Q3 23
$302.1M
Q2 23
$294.1M
$190.2M
Q1 23
$216.2M
Q4 22
$215.6M
Q3 22
$243.6M
Total Assets
PTGX
PTGX
STOK
STOK
Q1 25
$406.9M
Q4 24
$744.7M
$271.6M
Q1 24
$629.3M
Q3 23
$330.0M
Q2 23
$320.5M
$256.9M
Q1 23
$239.9M
Q4 22
$247.9M
Q3 22
$282.2M

Cash Flow & Capital Efficiency

How much cash each business actually produces after reinvestment. Cash flow is harder to manipulate than net income.

Metric
PTGX
PTGX
STOK
STOK
Operating Cash FlowLast quarter
$184.2M
$131.8M
Free Cash FlowOCF − Capex
$182.8M
$131.7M
FCF MarginFCF / Revenue
107.1%
83.0%
Capex IntensityCapex / Revenue
0.8%
0.1%
Cash ConversionOCF / Net Profit
1.40×
1.17×
TTM Free Cash FlowTrailing 4 quarters
$101.7M

8-quarter trend — quarters aligned by calendar period.

Operating Cash Flow
PTGX
PTGX
STOK
STOK
Q1 25
$131.8M
Q4 24
$184.2M
$-23.2M
Q1 24
$-27.4M
Q3 23
$-26.6M
Q2 23
$-26.2M
$-21.8M
Q1 23
$-34.3M
Q4 22
$-108.1M
Q3 22
$-25.2M
Free Cash Flow
PTGX
PTGX
STOK
STOK
Q1 25
$131.7M
Q4 24
$182.8M
$-23.2M
Q1 24
$-27.7M
Q3 23
$-27.0M
Q2 23
$-26.4M
$-22.6M
Q1 23
$-34.4M
Q4 22
$-108.9M
Q3 22
$-25.4M
FCF Margin
PTGX
PTGX
STOK
STOK
Q1 25
83.0%
Q4 24
107.1%
-102.7%
Q1 24
-10.9%
Q3 23
Q2 23
912.5%
Q1 23
Q4 22
Q3 22
Capex Intensity
PTGX
PTGX
STOK
STOK
Q1 25
0.1%
Q4 24
0.8%
0.2%
Q1 24
0.1%
Q3 23
Q2 23
-33.8%
Q1 23
Q4 22
Q3 22
Cash Conversion
PTGX
PTGX
STOK
STOK
Q1 25
1.17×
Q4 24
1.40×
Q1 24
-0.13×
Q3 23
Q2 23
Q1 23
Q4 22
Q3 22

Financial Flow Comparison

Revenue → gross profit → operating profit → net profit for each company.

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