Biggest changeBusiness , of this Annual Report on Form 10-K. 127 Results of Operations — Comparison of the Years Ended December 31, 2023 and 2022 Operating Expenses Research and Development Expenses Year ended December 31, (in thousands) 2023 2022 Change Research and development expenses: Lab supplies $ 59,609 $ 30,658 $ 28,951 Personnel expenses 51,095 31,624 19,471 Facility related 24,221 16,100 8,121 Professional and consultant fees 6,845 2,186 4,659 License, intellectual property fees, and other 6,135 6,157 (22) Total research and development expenses $ 147,905 $ 86,725 $ 61,180 The $61.2 million increase in research and development expense for the year ended December 31, 2023 as compared to the year ended December 31, 2022 is primarily driven by: • $29.0 million increase in lab supplies expense due to continued discovery efforts and expansion of our research and development activities, including ongoing IND-enabling activities, and increased personnel in our R&D function; • $19.5 million increase in personnel expense, including an increase in stock-based compensation expense of $3.5 million, and $4.7 million increase in professional and consultant fees, both driven by our increased headcount as we continue to build out our research and development function; and • $8.1 million increase in facility-related expense primarily due to the expansion and build out of our office and laboratory space.
Biggest changeBusiness , of this Annual Report on Form 10-K. 114 Results of Operations — Comparison of the Years Ended December 31, 2024 and 2023 Operating Expenses Research and Development Expenses Year ended December 31, (in thousands) 2024 2023 Change Research and development expenses: Personnel expenses $ 59,988 $ 51,095 $ 8,893 Research costs 41,678 59,609 (17,931) Facility related 35,509 24,221 11,288 License, intellectual property fees, and other 8,060 6,135 1,925 Professional and consultant fees 5,919 6,845 (926) Clinical expense 4,135 — 4,135 Total research and development expenses $ 155,289 $ 147,905 $ 7,384 The $7.4 million increase in research and development expense for the year ended December 31, 2024 as compared to the year ended December 31, 2023 is primarily driven by: • $11.3 million increase in facility-related expense primarily due to the expansion and build out of our laboratory space. • $8.9 million increase in personnel expense, including an increase in stock-based compensation expense of $4.8 million, driven by the higher headcount of our research and development function as compared to the prior year; • $4.1 million increase in clinical expenses related to PM359, our candidate to treat chronic granulomatous disease; and • $1.9 million increase in license fees for amounts due to the Broad resulting from the BMS Collaboration Agreement.
Although we do not expect our estimates to be materially different from amounts actually incurred, our understanding of the status and timing of services performed relative to the actual status and timing of services performed may vary and could have a significant impact on reported amounts.
Although we do not expect our estimates to be materially different from amounts actually incurred, our understanding of the status and timing of services performed relative 120 to the actual status and timing of services performed may vary and could have a significant impact on reported amounts.
These expenses include: • the cost allocated to acquire in-process research and development, with no alternative future use associated with asset acquisitions or transactions to license intellectual property, such as our Broad License Agreement; • expenses incurred in connection with our Pledge to Broad Institute; • personnel-related expenses, including salaries, bonuses, benefits and stock-based compensation for employees engaged in manufacturing, research and development functions; • expenses incurred in connection with continuing our current research programs and preclinical development of any product candidates we may identify, including under agreements with third parties, such as consultants and contractors; 126 • the cost of developing and validating our manufacturing process for use in our preclinical studies and future clinical trials; • laboratory supplies and research materials; and • facilities, depreciation and other expenses related to research and development activities, which include direct or allocated expenses for rent and maintenance of facilities, and utilities.
These expenses include: • personnel-related expenses, including salaries, bonuses, benefits, and stock-based compensation for employees engaged in manufacturing, research and development functions; • expenses incurred in connection with continuing our current research programs and preclinical and clinical development of any product candidates we may identify, including under agreements with third parties, such as consultants and contractors; • the cost of developing and validating our manufacturing process for use in our preclinical and clinical studies; • laboratory supplies and research materials; 113 • facilities, depreciation and other expenses related to research and development activities, which include direct or allocated expenses for rent and maintenance of facilities, and utilities; • the cost allocated to acquire in-process research and development, with no alternative future use associated with asset acquisitions or transactions to license intellectual property, such as our Broad License Agreement; and • expenses incurred in connection with our Pledge to Broad Institute.
If we are unable to raise additional funds through equity or debt financings or other arrangements when needed, we may be required to delay, reduce or eliminate our product development or future 131 commercialization efforts, or grant rights to develop and market product candidates that we would otherwise prefer to develop and market ourselves.
If we are unable to raise additional funds through equity or debt financings or other arrangements when needed, we may be required to delay, reduce or eliminate our product development or future 119 commercialization efforts, or grant rights to develop and market product candidates that we would otherwise prefer to develop and market ourselves.
Other Income (Expense) Other income (expense), net consists of: • interest and other income earned on our short-term investments; and • the change in the fair value of our short-term investment in Beam Therapeutics Inc. (“Beam”), a related party, in connection with the Beam Collaboration Agreement, which is discussed in greater detail in Item 1.
Other Income (Expense) Other income (expense), net consists of: • interest and other income earned on our short-term investments; and • the change in the fair value of our short-term investment in Beam Therapeutics Inc., or Beam, a related party, in connection with the Beam Collaboration Agreement, which is discussed in greater detail in Item 1.
These were offset by: • $30.1 million of non-cash amounts included in net loss, which consisted primarily of stock-based compensation expense, non-cash lease expense, depreciation and amortization expense, and change in fair value of short-term investment — related party; • $13.5 million change in accrued settlement payment — related party; • $9.1 million change in accounts payable; and • $1.8 million change in accrued expenses and other assets.
These were offset by: • $30.1 million of non-cash amounts included in net loss, which primarily consisted of change in non-cash lease expense, fair value of short-term investment — related party, and stock-based compensation expense; • $13.5 million change in accrued settlement payment — related party; • $9.1 million change in accounts payable; and • $1.8 million change in accrued expenses and other current liabilities.
Refer to Note 10, Leases, to our consolidated financial statements appearing within this Annual Report on Form 10-K for more information on our lease obligations. Under our license and collaboration agreements, we are potentially obligated to pay certain milestones, royalty fees, licensing maintenance fees, and reimbursement of patent maintenance costs.
Contractual Obligations and Other Commitments Leases Refer to Note 6, Leases, to our consolidated financial statements appearing within this Annual Report on Form 10-K for information on our lease obligations. Under our license and collaboration agreements, we are potentially obligated to pay certain milestones, royalty fees, licensing maintenance fees, and reimbursement of patent maintenance costs.
In November 2023, we entered into an Open Market Sale Agreement SM (the “Sales Agreement”) with Jefferies LLC (“Jefferies”) under which we may, from time to time, issue and sell shares of our common stock having aggregate sales proceeds of up to $300.0 million, in a series of one or more at-the-market equity offerings (the “2023 ATM Program”).
In November 2023, we entered into an Open Market Sale Agreement SM , or the Sales Agreement, with Jefferies LLC, or Jefferies, under which we may, from time to time, issue and sell shares of our common stock having an aggregate sales proceeds of up to $300.0 million, in a series of one or more at-the-market equity offerings, or the 2023 ATM Program.
The timing and amount of our operating expenditures will depend largely on the factors set out above. For more information, see “Risk Factors—Risks Related To Our Financial Position and Need for Additional Capital.” We believe our existing cash, cash equivalents, and investments will be sufficient to fund our operating expenses and capital expenditure requirements into the third quarter of 2025.
The timing and amount of our operating expenditures will depend largely on the factors set out above. For more information, see “Risk Factors—Risks Related To Our Financial Position and Need for Additional Capital.” We believe our existing cash, cash equivalents, and investments will be sufficient to fund our operating expenses and capital expenditure requirements into the first half of 2026.
Overview We are a biotechnology company committed to delivering a new class of differentiated one-time curative genetic therapies to address the widest spectrum of diseases. We are deploying Prime Editing technology, which we believe is a versatile, precise, and efficient gene editing technology.
Overview We are a biotechnology company committed to delivering a new class of differentiated one-time curative genetic therapies. We are deploying Prime Editing technology, which we believe is a versatile, precise, and efficient gene editing technology.
Emerging Growth Company Status The Jumpstart Our Business Startups Act of 2012 permits an “emerging growth company” such as us to take advantage of an extended transition period to comply with new or revised accounting standards applicable to public companies until those standards would otherwise apply to private companies.
Emerging Growth Company Status The JOBS Act permits an “emerging growth company” such as us to take advantage of an extended transition period to comply with new or revised accounting standards applicable to public companies until those standards would otherwise apply to private companies.
We do not expect to generate revenue from product sales unless and until we successfully complete preclinical and clinical development of, receive regulatory approval for, and commercialize a product candidate and we do not know when, or if at all, that will occur.
Funding Requirements To date, we have not generated any revenue from product sales. We do not expect to generate revenue from product sales unless and until we successfully complete preclinical and clinical development of, receive regulatory approval for, and commercialize a product candidate and we do not know when, or if at all, that will occur.
We expect our research and development expenses to continue to increase substantially for the foreseeable future with our planned research and development activities related to developing any future product candidates, including investments in manufacturing, as we advance any product candidates we may identify and begin to conduct clinical trials.
We expect our research and development expenses to continue to increase substantially for the foreseeable future with our planned research and development activities related to developing any future product candidates, including investments in manufacturing, as we advance any product candidates we may identify and conduct clinical trials, and with our obligations under the BMS Collaboration Agreement.
We expense all research and development costs in the periods in which they are incurred. Most of our research and development expenses have been related to early stage development activities. In the future, external research and development costs for any individual product candidate will be tracked commencing upon product candidate nomination.
We expense all research and development costs in the periods in which they are incurred. Most of our research and development expenses have been related to early stage development activities. External research and development costs for any individual product candidate will be tracked upon the FDA’s clearance of the IND application for that product candidate.
In February 2024, we issued and sold 22,560,001 shares of our common stock, including 3,360,000 shares pursuant to the exercise of the underwriters’ option to purchase additional shares, at a price to the public of $6.25 per share.
As of December 31, 2024, we have not sold any shares of common stock under the 2023 ATM Program. 116 In February 2024, we issued and sold 22,560,001 shares of our common stock, including 3,360,000 shares pursuant to the exercise of the underwriters’ option to purchase additional shares, at a price to the public of $6.25 per share.
The Black-Scholes option pricing model used to determine the fair value of our stock options includes various assumptions, including the expected term of the award, the expected volatility, and the expected risk-free interest rate, expected dividend payments, and the fair value of the common stock underlying the stock-based award. We consider the expected volatility to be a critical accounting estimate.
We account for forfeitures of stock-based awards as they occur. The Black-Scholes option pricing model used to determine the fair value of our stock options includes various assumptions, including the expected term of the award, the expected volatility, and the expected risk-free interest rate, expected dividend payments, and the fair value of the common stock underlying the stock-based award.
To date, we have funded our operations primarily with proceeds from sales of preferred stock and public offerings of our common stock. As of December 31, 2023, we had cash and cash equivalents, short-term investments, and related party short-term investments of $121.7 million, excluding our restricted cash, or $135.2 million, including restricted cash.
To date, we have funded our operations primarily with proceeds from sales of preferred stock, public offerings of our common stock, and through payments from our collaboration partners. As of December 31, 2024, we had cash and cash equivalents, short-term investments, and related party short-term investments of $190.4 million, excluding our restricted cash, or $204.5 million, including restricted cash.
Investing Activities Net cash provided by investing activities for the year ended December 31, 2023 was driven primarily by the following: • $27.6 million of maturities of short-term investments, net of purchases; offset by • $8.7 million of purchases of property and equipment. 130 Net cash used in investing activities for the year ended December 31, 2022 was driven primarily by the following: • $30.3 million of purchases of short-term investments, net of maturities; and • $16.1 million of purchases of property and equipment.
Investing Activities Net cash provided by investing activities for the year ended December 31, 2024 was driven primarily by the following: • $74.8 million of maturities of short-term investments, net of purchases; offset by • $7.3 million of purchases of property and equipment.
Net cash used in operating activities for the year ended December 31, 2022 was driven primarily by the following uses of cash: • $121.8 million net loss; • $25.9 million change in accrued expenses and other current liabilities; • $10.2 million change in lease liabilities; and • $1.7 million change in prepaid and other current assets.
Net cash used in operating activities for the year ended December 31, 2023 was driven primarily by the following uses of cash: • $198.1 million net loss; • $12.3 million change in lease liabilities; and • $9.5 million change in prepaid expenses and other current assets.
As we do not have sufficient trading history, we use the average historical volatility of a representative group of publicly traded biopharmaceutical companies to calculate the expected volatility for use in the Black-Scholes option pricing model. This assumption reflects our best estimate; but determining a representative peer group involves subjective considerations.
We consider the expected volatility to be a critical accounting estimate. As we do not have sufficient trading history, we use the average historical volatility of a representative group of publicly traded biopharmaceutical companies to calculate the expected volatility for use in the Black-Scholes option pricing model.
Our common stock will be sold at prevailing market prices at the time of the sale, and as a result, prices may vary. As of December 31, 2023, we have not sold any shares of common stock under the 2023 ATM program.
Our common stock will be sold at prevailing market prices at the time of the sale, and as a result, prices may vary.
Stock-Based Compensation Expense Subsequent to our IPO, we measure stock-based awards granted to employees, directors, and non-employees based on their fair value on the date of the grant using the Black-Scholes option-pricing model for stock options.
Stock-Based Compensation Expense We measure stock-based awards granted to employees, directors, and non-employees based on their fair value on the date of the grant using the Black-Scholes option-pricing model for stock options. Compensation expense for those awards is recognized over the requisite service period, which is generally the vesting period of the respective award, using the straight-line method.
These were offset by: • $25.4 million of non-cash amounts included in net loss, which primarily consisted of change in non-cash lease expense, fair value of short-term investment — related party, and stock-based compensation expense; and • $2.5 million change in accounts payable.
These were offset by: • $70.3 million change in deferred revenue; • $41.9 million of non-cash amounts included in net loss, which consisted primarily of stock-based compensation expense, non-cash lease expense, depreciation and amortization expense, and change in fair value of short-term investment — related party; and • $1.8 million change in accrued expenses and other assets.
As a result of the offering, we received approximately $150.9 million in net proceeds, after deducting underwriting discounts, commissions and estimated offering costs of $10.1 million. 129 Cash Flows The following table summarizes our sources and uses of cash for each of the periods presented: Year ended December 31, (in thousands) 2023 2022 Net change in cash, cash equivalents, and restricted cash Net cash used in operating activities $ (165,412) $ (131,827) Net cash provided by (used in) investing activities 18,711 (47,096) Net cash provided by (used in) investing activities 655 181,494 Net change in cash, cash equivalents, and restricted cash $ (146,046) $ 2,571 Operating Activities Net cash used in operating activities for the year ended December 31, 2023 was driven primarily by the following uses of cash: • $198.1 million net loss; • $12.3 million change in lease liabilities; and • $9.5 million change in prepaid and other current assets.
Cash Flows The following table summarizes our sources and uses of cash for each of the periods presented: Year ended December 31, (in thousands) 2024 2023 Net change in cash, cash equivalents, and restricted cash Net cash used in operating activities $ (122,865) $ (165,412) Net cash provided by investing activities 68,457 18,711 Net cash provided by financing activities 195,876 655 Net change in cash, cash equivalents, and restricted cash $ 141,468 $ (146,046) 117 Operating Activities Net cash used in operating activities for the year ended December 31, 2024 was driven primarily by the following uses of cash: • $195.9 million net loss; • $15.9 million change in prepaid expenses and other current assets; • $13.5 million change in accrued settlement payment — related party; • $6.5 million change in lease liabilities; and • $5.3 million change in accounts payable.
General and Administrative Expenses Year ended December 31, (in thousands) 2023 2022 Change General and administrative expenses: Professional and consultant fees $ 17,642 $ 13,013 $ 4,629 Personnel expenses 17,076 11,094 5,982 Facility related and other 8,669 5,712 2,957 Total general and administrative expenses $ 43,387 $ 29,819 $ 13,568 The $13.6 million increase in general and administrative expense for the year ended December 31, 2023 as compared to the year ended December 31, 2022 is primarily driven by: • $4.6 million increase in professional and consultant fees and $6.0 million increase in personnel expenses, which includes an increase in stock-based compensation expense of $3.9 million, both driven by growth in 128 personnel as we operate as a public company and to support our growing research and development function; and • $3.0 million increase in facility related expenses primarily due to the expansion and build out of our office space.
General and Administrative Expenses Year ended December 31, (in thousands) 2024 2023 Change General and administrative expenses: Personnel expenses $ 26,569 $ 17,076 $ 9,493 Professional and consultant fees 13,459 17,642 (4,183) Facility related and other 10,133 8,669 1,464 Total general and administrative expenses $ 50,161 $ 43,387 $ 6,774 115 The $6.8 million increase in general and administrative expense for the year ended December 31, 2024 as compared to the year ended December 31, 2023 is primarily driven by: • $9.5 million increase in personnel expense, a majority of which was an increase in non-cash stock-based compensation expense of $7.4 million; and • $1.5 million increase in facility related and other primarily related to the ongoing build out of our facility at 60 First Street.
As a result, if a different peer group is used to estimate volatility, the resulting volatility could have a material impact on our stock-based compensation expense. Determination of the Fair Value of Our Common Stock Issued Prior to Our IPO Prior to our IPO in October 2022, there was no public market for our common stock.
This assumption reflects our best estimate; but determining a representative peer group involves subjective considerations. As a result, if a different peer group is used to estimate volatility, the resulting volatility could have a material impact on our stock-based compensation expense.
Other Income (Expense) Year ended December 31, (in thousands) 2023 2022 Change Other income (expense): Change in fair value of short-term investment — related party $ (2,382) $ (8,128) $ 5,746 Other income, net 8,762 1,903 6,859 Total other income (expense), net $ 6,380 $ (6,225) $ 12,605 Change in Fair Value of Related Party Short-Term Investment For all periods presented, the change in fair value of related party short-term investment for each of the periods presented is a result of Beam’s stock price movement from the start of each respective year to the end of each respective year.
Other Income (Expense) Year ended December 31, (in thousands) 2024 2023 Change Other income: Interest income 3,522 2,811 711 Accretion (amortization) of investments $ 3,507 $ 5,677 $ (2,170) Change in fair value of short-term investment — related party (485) (2,382) 1,897 Other income, net 41 274 (233) Total other income, net $ 6,585 $ 6,380 $ 205 Accretion of investments Accretion (amortization) of investments for each of the periods presented is a result of the price at which our investments are purchased.
Components of Our Results of Operations Research and Development Expenses Research and development expenses consist primarily of costs incurred for our research activities, including our discovery efforts, and the development of our product candidates.
To date, we have not generated any revenue from product sales or royalties and do not expect to generate any revenue from the sale of products or royalties for the foreseeable future. Research and Development Expenses Research and development expenses consist primarily of costs incurred for our research activities, including our discovery efforts, and the development of our product candidates.
Other Income (Expense), Net For all periods presented, the amount of other income, net, net primarily consists of interest income from short-term investments. Liquidity and Capital Resources Since our inception, we have incurred significant operating losses.
Change in Fair Value of Related Party Short-Term Investment The change in fair value of related party short-term investment for each of the periods presented is a result of Beam’s stock price movement. Liquidity and Capital Resources Since our inception, we have incurred significant operating losses.
Programs within our other areas of focus are in earlier stages of preclinical development and include: • Liver programs: Wilson’s disease and glycogen storage disease 1b • Lung program: Cystic fibrosis • Ocular program: Retinitis pigmentosa caused by Rhodopsin mutations. • Neuromuscular programs: Friedreich’s ataxia and myotonic dystrophy type 1 • Additional program: CAR-T We believe our Prime Editing programs are well-positioned to leverage the clinical, regulatory, and manufacturing advancements made to date across gene therapy, gene editing, and delivery modalities to accelerate progression to clinical trials and potential approval.
CGD, is our most advanced blood program, and we have designated PM359 as our candidate in the treatment of this disease. We believe our Prime Editing programs are well-positioned to leverage the clinical, regulatory, and manufacturing advancements made to date across gene therapy, gene editing, and delivery modalities to accelerate progression to clinical trials and potential approval.
Settlement Payment — Related Party In January 2024, we entered into a settlement agreement with Myeloid to resolve two arbitration proceedings.
This is offset by a $17.9 million decrease in lab supplies expense as materials used in the current year for our ongoing Phase 1 clinical trial were purchased in advance in 2023. Settlement Payment — Related Party In January 2024, we entered into a settlement agreement with Myeloid Therapeutics, Inc., or Myeloid, to resolve two arbitration proceedings.