Biggest changeThe increase was primarily driven by the following: • $143.7 million decrease in manufacturing expenses primarily due to the capitalization of commercial batches of ELEVIDYS manufactured after its approval in June 2023 and a decrease of $54.0 million related to the minimum purchase requirements under a gene therapy manufacturing and supply agreement with Thermo (the “Thermo Agreement”) in 2022, with no similar activity in 2023; • $51.5 million increase in clinical trial expenses primarily due to an increased patient enrollment and site activation for our MIS51ON, MOMENTUM, ENVISION, EMERGENE and EXPEDITION programs, as well as additional PPMO clinical trials; • $38.8 million increase in compensation and other personnel expenses primarily due to changes in headcount; • $18.3 million increase in facility- and technology-related expenses primarily due to our continuing expansion efforts; - 78 - • $21.2 million increase in stock-based compensation expense primarily due to changes in headcount and the value of stock awards, as well as the achievement of performance conditions related to certain shares with performance conditions (“PSUs”) in 2023 with continuing vesting requirements related to a service condition; • $9.7 million increase in professional service expenses primarily related to the launch of ELEVIDYS prior to its regulatory approval in June 2023; • $21.9 million decrease in up-front, milestone and other expenses, primarily due to timing and costs related to the execution of certain research and license agreements and achievement of certain milestones year over year; • $3.1 million increase in pre-clinical expenses primarily due to an increase in toxicology study activity across multiple gene therapy and PPMO platforms; • $12.0 million increase in research and other expenses primarily driven by an increase in sponsored research with academic institutions during 2023 and an increase in collaboration cost-sharing expenses related to Genethon's micro-dystrophin drug candidate; and • $11.3 million decrease in the offset to expense associated with a collaboration reimbursement from Roche primarily due to a decrease in reimbursed cost related to the minimum purchase requirements under the Thermo Agreement for 2022, with no similar activity in 2023, partially offset by the continuing development of our SRP-9001 gene therapy programs.
Biggest changePlease refer to Note 22, Commitments and Contingencies for further discussion of the Thermo Agreement; • $2.6 million increase in compensation and other personnel expenses primarily due to changes in headcount, partially offset by an increase in indirect manufacturing costs absorption offset as a result of ELEVIDYS approval in June 2023; • $23.7 million decrease in clinical trial expenses primarily due to a decrease in activity for our PPMO platform and our decision to discontinue our PPMO programs in November 2024, as well as a ramp-down of the ESSENCE studies for AMONDYS 45 and VYONDYS 53; • $3.4 million increase in facility- and technology-related expenses primarily due to our continuing expansion efforts, partially offset by an increase in indirect manufacturing costs absorption offset as a result of ELEVIDYS approval in June 2023; • $8.5 million decrease in stock-based compensation expense primarily due to an increase in indirect manufacturing costs absorption offset as a result of ELEVIDYS approval in June 2023, partially offset by the achievement of performance conditions related to certain restricted stock units with performance conditions (“PSUs”) during 2024; • $3.9 million increase in professional services primarily due to an increase in reliance on third-party research and development contractors for clinical programs, partially offset by an increase in indirect manufacturing costs absorption offset as a result of ELEVIDYS approval in June 2023; • $5.5 million decrease in pre-clinical expenses primarily due to a decrease in activity in our PPMO platform and decision to discontinue our PPMO programs in November 2024; • $8.5 million decrease in research and other expenses primarily due to timing of achievement of certain up-front and milestone payments, partially offset by an increase in sponsored research with academic institutions during 2024; and • $19.7 million increase in the offset to expense associated with a collaboration reimbursement from Roche due to reimbursable costs associated with the termination of the Thermo Agreement during 2024, with no similar activity during 2023.
Cost of sales (excluding amortization of in-licensed rights) Our cost of sales (excluding amortization of in-licensed rights) consists of inventory costs that relate to sales of our products and the related overhead costs and royalty payments primarily to BioMarin and UWA for the PMO Products and to Nationwide for ELEVIDYS.
Cost of sales (excluding amortization of in-licensed rights) Our cost of sales (excluding amortization of in-licensed rights) consists of inventory costs that relate to sales of our products and the related overhead costs and royalty payments primarily to BioMarin and UWA for our PMO Products and to Nationwide for ELEVIDYS.
For products and product candidates that are currently approved or are in various research and development stages, we may be obligated to make up to $3.2 billion of future development, regulatory, up-front royalty and sales milestone payments associated with our collaboration and license agreements.
For products and product candidates that are currently approved or are in various research and development stages, we may be obligated to make up to $2.3 billion of future development, regulatory, up-front royalty and sales milestone payments associated with our license and collaboration agreements.
Cash used in investing activities in 2023 primarily consisted of purchases of available-for-sale securities, property and equipment and intangible assets of $2,044.9 million, $76.1 million and $11.2 million, respectively, partially offset by $102.0 million of net proceeds related to the sale of the ELEVIDYS PRV and $1,868.5 million from the maturity and sales of available-for-sale securities.
Cash used in investing activities in 2023 primarily consisted of purchases of available-for-sale securities, property and equipment and intangible assets of $2,044.9 million, $76.1 million and $11.2 million, respectively, partially offset by $1,868.5 million from the maturity and sales of available-for-sale securities and $102.0 million of net proceeds related to the sale of the ELEVIDYS PRV.
Direct research and development expenses associated with our programs include clinical trial site costs, clinical manufacturing costs, costs incurred for consultants, up-front fees and milestones paid to third parties in connection with technologies that have not reached technological feasibility and do not have an alternative future use, and other external services, such as data management and statistical analysis - 77 - support, and materials and supplies used in support of clinical programs.
Direct research and development expenses associated with our programs include clinical trial site costs, clinical manufacturing costs, costs incurred for consultants, up-front fees and milestones paid to third parties in connection with technologies that have not reached technological feasibility and do not have an alternative future use, and other external services, such as data management and statistical analysis support, and materials and supplies used in support of clinical programs.
Cash used in operating activities in 2023 was primarily driven by the net loss of $536.0 million, adjusted for the following non-cash charges: • $387.3 million in loss on debt extinguishment of the 2024 Notes; • $182.5 million in stock-based compensation expense; • $44.4 million in depreciation and amortization expense; • $30.3 million in impairments associated with our strategic investments; and • $19.7 million in other non-cash items.
Cash used in operating activities in 2023 was primarily driven by the net loss of $536.0 million, adjusted for the following non-cash items: • $387.3 million in loss on debt extinguishment of the 2024 Notes; • $182.5 million in stock-based compensation expense; • $44.4 million in depreciation and amortization expense; • $30.3 million in impairments associated with our strategic investments; and • $19.7 million in other non-cash items.
We have developed proprietary state-of-the-art CMC and manufacturing capabilities that allow synthesis and purification of our products and product candidates to support both clinical development as well as commercialization. Our current main focus in manufacturing is to sustain large-scale production of our PMO-based therapies and optimizing manufacturing for PPMO and gene therapy-based product candidates.
We have developed proprietary state-of-the-art CMC and manufacturing capabilities that allow synthesis and purification of our products and product candidates to support both clinical development as well as commercialization. Our current main focus in manufacturing is to sustain large-scale production of our PMO-based therapies and optimizing manufacturing for gene therapy-based product candidates.
We cannot provide assurances that financing will be available when and as needed or that, if available, the financings will be on favorable or acceptable terms. If we are unable to obtain additional financing when and if we require, this would have a material - 81 - adverse effect on our business and results of operations.
We cannot provide assurances that financing will be available when and as needed or that, if available, the financings will be on favorable or acceptable terms. If we are unable to obtain additional financing when and if we require, this would have a material adverse effect on our business and the results of operations.
Beyond 2024, our cash requirements will depend extensively on our ability to advance our research, development and commercialization of product candidates. We may seek additional financings primarily from, but not limited to, the sale and issuance of equity and debt securities, the licensing or sale of our technologies, and entering into additional government contracts and/or funded research and development agreements.
Beyond 2025, our cash requirements will depend extensively on our ability to advance our research, development and commercialization of product candidates. We may seek additional financings primarily from, but not limited to, the sale and issuance of equity and debt securities, the licensing or sale of our technologies and entering into additional government contracts and/or funded research and development agreements.
Discussions of 2021 items and year-to-year comparisons between 2022 and 2021 have been excluded from this Form 10-K and can be found in “Management’s Discussion and Analysis of Financial Condition and Results of Operations” in Part II, Item 7 of our Annual Report on Form 10-K for the fiscal year ended December 31, 2022.
Discussions of 2022 items and year-to-year comparisons between 2023 and 2022 have been excluded from this Form 10-K and can be found in “Management’s Discussion and Analysis of Financial Condition and Results of Operations” in Part II, Item 7 of our Annual Report on Form 10-K for the fiscal year ended December 31, 2023.
Throughout this discussion, unless the context specifies or implies otherwise, the terms “Sarepta”, “we”, “us” and “our” refer to Sarepta Therapeutics, Inc. and its subsidiaries. This section discusses 2023 and 2022 items and year-to-year comparisons between 2023 and 2022.
Throughout this discussion, unless the context specifies or implies otherwise, the terms “Sarepta”, “we”, “us” and “our” refer to Sarepta Therapeutics, Inc. and its subsidiaries. This section discusses 2024 and 2023 items and year-to-year comparisons between 2024 and 2023.
Cash provided by financing activities in 2023 consisted of $80.6 million in partial settlement of capped call options for the 2024 Notes and $51.2 million in proceeds from exercise of options and purchase of stock under our employee stock purchase program, partially offset by $6.9 million in third-party debt conversion costs related to the 2024 Notes Exchange.
Cash provided by financing activities in 2023 consisted of $80.6 million in partial settlement the 2017 Capped Calls and $51.2 million in proceeds from exercise of options and purchase of stock under our Employee Stock Purchase Program, partially offset by $6.9 million in third-party debt conversion costs related to the 2024 Notes Exchange.
Our pipeline includes more than 40 programs in various stages of pre-clinical and clinical development, reflecting our multifaceted approach and expertise in precision genetic medicine to make a profound difference in the lives of patients suffering from rare diseases.
Our pipeline includes programs in various stages of pre-clinical and clinical development, reflecting our multifaceted approach and expertise in precision genetic medicine to make a profound difference in the lives of patients suffering from rare diseases.
VYONDYS 53 uses our PMO chemistry and exon-skipping technology to skip exon 53 of the dystrophin gene. • AMONDYS 45 (casimersen) Injection (“AMONDYS 45”), approved by the FDA on February 25, 2021, is indicated for the treatment of Duchenne in patients who have a confirmed mutation of the dystrophin gene that is amenable to exon 45 skipping.
VYONDYS 53 uses our PMO chemistry and exon-skipping technology to skip exon 53 of the dystrophin gene. o AMONDYS 45 (casimersen) Injection (“AMONDYS 45”), granted accelerated approval by the FDA on February 25, 2021, is indicated for the treatment of Duchenne in patients who have a confirmed mutation of the dystrophin gene that is amenable to exon 45 skipping.
Each in-licensed right is being amortized on a straight-line basis over the remaining life of the relevant patent from the date the related fee was incurred, either the regulatory approval or the first commercial sale of the applicable product. For 2023 and 2022, we recorded amortization of in-licensed rights of $1.6 million and $0.7 million, respectively.
Each in-licensed right is being amortized on a straight-line basis over the remaining life of the relevant patent from the date the related fee was incurred, either the regulatory approval or the first commercial sale of the applicable product. For 2024 and 2023, we recorded amortization of in-licensed rights of $2.4 million and $1.6 million, respectively.
We commercialized four products, all of which were granted accelerated approval by the FDA: • EXONDYS 51 (eteplirsen) Injection (“EXONDYS 51”), approved by the FDA on September 19, 2016, is indicated for the treatment of Duchenne in patients who have a confirmed mutation of the dystrophin gene that is amenable to exon 51 skipping.
We commercialized four products that have been approved by the FDA: • The PMO Products: o EXONDYS 51 (eteplirsen) Injection (“EXONDYS 51”), granted accelerated approval by the FDA on September 19, 2016, is indicated for the treatment of Duchenne in patients who have a confirmed mutation of the dystrophin gene that is amenable to exon 51 skipping.
Other Funding Commitments We have several on-going clinical trials in various development stages. Our most significant clinical trial expenditures are to CROs. The CRO contracts are generally cancellable at our option. As of December 31, 2023, we had approximately $580.0 million in cancellable future commitments based on existing CRO contracts.
Other Funding Commitments We have several on-going clinical trials in various development stages. Our most significant clinical trial expenditures are to CROs. The CRO contracts are generally cancellable at our option. As of December 31, 2024, we had approximately $594.5 million in cancellable future commitments based on existing CRO contracts.
Critical Accounting Policies and Estimates The discussion and analysis of our financial condition and results of operations is based upon our consolidated financial statements included elsewhere in this Annual Report on Form 10-K.
Critical Accounting Policies and Estimates The discussion and analysis of our financial condition and results of operations is based upon our consolidated financial statements included elsewhere in this Annual Report on Form 10-K. The preparation of our consolidated financial statements in accordance with U.S.
Additional information regarding our obligations under debt, lease, and manufacturing arrangements is provided in Note 13, Indebtedness, Note 19, Leases and Note 21, Commitments and Contingencies , respectively, to the consolidated financial statements.
Additional information regarding our obligations under debt, lease, and manufacturing arrangements is provided in Note 13, Indebtedness, Note 19, Leases, Note 22, Commitments and Contingencies and Note 23, Subsequent event, respectively, to the consolidated financial statements.
The likelihood of our long-term success must be considered in light of the expenses, difficulties and delays frequently encountered in the development and commercialization of new pharmaceutical products, competitive factors in the marketplace, the risks associated with government sponsored reimbursement programs and the complex regulatory environment in which we operate. We may never achieve significant revenue or profitable operations.
The likelihood of our long-term success must be considered in light of the expenses, difficulties and delays frequently encountered in the development and commercialization of new pharmaceutical products, competitive factors in the marketplace, the risks associated with government sponsored reimbursement programs and the complex regulatory environment in which we operate.
Applying our proprietary, highly differentiated and innovative technologies, and through collaborations with our strategic partners, we have developed multiple approved products for the treatment of Duchenne muscular dystrophy (“Duchenne”) and are developing potential therapeutic candidates for a broad range of diseases and disorders, including Duchenne, Limb-girdle muscular dystrophies (“LGMDs”), and other neuromuscular and central nervous system (“CNS”) related disorders.
Applying our proprietary, highly differentiated and innovative technologies, and through collaborations with our strategic partners, we have developed multiple approved products for the treatment of Duchenne and are developing potential therapeutic candidates for a broad range of diseases and disorders, including Duchenne, LGMDs, and other neuromuscular and central nervous system related disorders.
EXONDYS 51 uses our phosphorodiamidate morpholino oligomer (“PMO”) chemistry and exon-skipping technology to skip exon 51 of the dystrophin gene. • VYONDYS 53 (golodirsen) Injection (“VYONDYS 53”), approved by the FDA on December 12, 2019, is indicated for the treatment of Duchenne in patients who have a confirmed mutation of the dystrophin gene that is amenable to exon 53 skipping.
EXONDYS 51 uses our PMO chemistry and exon-skipping technology to skip exon 51 of the dystrophin gene. o VYONDYS 53 (golodirsen) Injection (“VYONDYS 53”), granted accelerated approval by the FDA on December 12, 2019, is indicated for the treatment of Duchenne in patients who have a confirmed mutation of the dystrophin gene that is amenable to exon 53 skipping.
For ELEVIDYS sold in 2023 and AMONDYS 45 sold in 2022, the majority of related manufacturing costs incurred had previously been expensed as research and development expense.
For ELEVIDYS sold in 2023, the majority of related manufacturing costs incurred had previously been expensed as research and development expenses.
If product related costs had not previously been expensed as research and development expenses prior to receiving FDA approval, the incremental inventory costs related to our PMO Products sold would have been approximately $12.3 million higher for 2022 and those related to ELEVIDYS sold, including products sold to Roche under the Collaboration Agreement, would have been approximately $33.9 million higher for 2023.
If product related costs had not previously been expensed as research and development expenses prior to receiving FDA approval, the incremental inventory costs related to ELEVIDYS sold, including products sold to Roche under the Roche Agreement, would have been approximately $100.8 million and $33.9 million higher for 2024 and 2023, respectively.
These amounts were partially offset by $10.7 million in accretion of investment discount, net.
These amounts were partially offset by $40.3 million in accretion of investment discount, net.
Any significant impact as a result of changes in underlying facts, law, tax rates, tax audit, or review could lead to adjustments to our deferred tax asset, income tax expense, our effective tax rate, and/or our cash flow.
Further, the calculation may involve the application of complex tax regulations in a foreign jurisdiction. Any significant impact as a result of changes in underlying facts, law, tax rates, tax audit, or review could lead to adjustments to our deferred tax asset, income tax expense, our effective tax rate, and/or our cash flow.
We have dosed one additional cohort of three patients at a higher dose per the study protocol. In June 2020, we announced safety and expression results from three clinical trial participants in the high dose cohort measured at 60 days, and one-year functional data from three clinical trial participants in the low-dose cohort.
In June 2020, we announced safety and expression results from three clinical trial participants in the high-dose cohort measured at 60 days, and one-year functional data from three clinical trial participants in the low-dose cohort.
Our future expenditures and long-term capital requirements may be substantial and will depend on many factors, including but not limited to the following: • our ability to continue to generate revenues from sales of commercial products and potential future products; • the timing and costs associated with our expansion efforts; • the timing and costs of building out our manufacturing capabilities; • the timing of payments related to our future inventory commitments and manufacturing obligations; • the timing and costs associated with our existing lease obligations and new obligations expected to be entered into in future years; • the timing and costs associated with our clinical trials and pre-clinical trials; • the attainment of milestones and our obligations to make milestone payments to Myonexus's selling shareholders, BioMarin, Nationwide, UWA and other institutions; • obligations to holders of our convertible notes; and • the costs of filing, prosecuting, defending and enforcing patent claims and our other intellectual property rights.
Our future expenditures and long-term capital requirements may be substantial and will depend on many factors, including but not limited to the following: • our ability to continue to generate revenues from sales of commercial products and potential future products; • the timing and costs associated with our expansion efforts; • the timing and costs associated with repurchases of our common stock under our $500.0 million share repurchase program, approved by our Board of Directors in November 2024 and effective for 18 months; • the timing and costs of building out our manufacturing capabilities; • the timing of payments related to our future inventory commitments and manufacturing obligations; - 79 - • the timing and costs associated with our existing lease obligations and new obligations expected to be entered into in future years; • the timing and costs associated with our clinical trials and pre-clinical trials; • the attainment of milestones and our obligations to make milestone payments to Arrowhead, Myonexus's selling shareholders, BioMarin, Nationwide, UWA and other institutions; • obligations to holders of our 1.25% convertible senior notes due on September 15, 2027 (“2027 Notes”); and • the costs of filing, prosecuting, defending and enforcing patent claims and our other intellectual property rights.
The following table summarizes the components of our collaboration and other revenues for the periods indicated: - 76 - For the Year Ended December 31, 2023 2022 Change Change (in thousands) $ % Amortization of performance obligations** $ 89,244 $ 89,244 $ — (— )% Contract manufacturing 9,216 — 9,216 NM* Total collaboration and other $ 98,460 $ 89,244 $ 9,216 10 % * NM: not meaningful ** Related to the recognition of previously deferred revenue under the Roche collaboration agreement as the Company satisfies its performance obligations under the contract.
The following table summarizes the components of our collaboration and other revenues for the periods indicated: - 74 - For the Year Ended December 31, 2024 2023 Change Change (in thousands) $ % Contract manufacturing $ 49,038 $ 9,216 $ 39,822 NM* Amortization of performance obligations** 48,000 89,244 (41,244 ) (46 )% Royalty revenue 16,981 — 16,981 NM* Total collaboration and other $ 114,019 $ 98,460 $ 15,559 16 % * NM: not meaningful ** Related to the recognition of previously deferred revenue under the Roche collaboration agreement as the Company satisfies its performance obligations under the contract.
To the extent we issue additional equity securities, our existing stockholders could experience substantial dilution. We have entered into long-term contractual arrangements from time to time for our facilities, the provision of goods and services, and issuance of debt securities, among others.
We have entered into long-term contractual arrangements from time to time for our facilities, the provision of goods and services, and issuance of debt securities, among others.
In March 2022, we announced 36-month functional data from three clinical trial participants in the low-dose cohort and 24-month functional data from two clinical trial participants in the high-dose cohort. In January 2024, we announced that we had begun screening in Study SRP-9003-301, a Phase 3, multi-national, open-label study of SRP-9003.
In March 2022, we announced 36-month functional data from three clinical trial participants in the low-dose cohort and 24-month functional data from two clinical trial participants in the high-dose cohort. In December 2024, we announced that we had completed enrollment and dosing in EMERGENE (Study SRP-9003-301), a Phase 3 clinical trial of SRP-9003 (bidridistrogene xeboparvovec).
AMONDYS 45 uses our PMO chemistry and exon-skipping technology to skip exon 45 of the dystrophin gene. • ELEVIDYS (delandistrogene moxeparvovec-rokl), approved by the FDA on June 22, 2023, is an adeno-associated virus based gene therapy for the treatment of ambulatory pediatric patients aged 4 through 5 years with Duchenne with a confirmed mutation in the Duchenne gene.
AMONDYS 45 uses our PMO chemistry and exon-skipping technology to skip exon 45 of the dystrophin gene. • ELEVIDYS (delandistrogene moxeparvovec-rokl), approved by the FDA on June 20, 2024, is an AAV-based gene therapy for the treatment of ambulatory patients at least four years old with Duchenne with a confirmed mutation in the Duchenne gene.
These non-cash charges were partially offset by the gain of $102.0 million recorded from the sale of the ELEVIDYS PRV and $46.2 million in accretion of investment discount, net. - 82 - The net cash outflow from changes in our operating assets and liabilities was primarily driven by the following: • $185.7 million increase in accounts receivable, net due to the launch of ELEVIDYS and an increase in the demand of our PMO Products; • $147.7 million increase in inventory primarily due to the addition of capitalized inventory corresponding to the regulatory approval of ELEVIDYS in June 2023; • $86.8 million decrease in deferred revenue primarily related to the collaboration with Roche; • $50.1 million decrease in accounts payable, accrued expenses, lease liabilities and other liabilities, primarily due to the $54.0 million shortfall payment to Thermo and payments to Catalent for raw materials in 2023 and the overall timing and invoicing of payments; and • $10.7 million increase in other assets primarily due to the timing and consumption of manufacturing prepaids.
The net cash outflow from changes in our operating assets and liabilities was primarily driven by the following: - 81 - • $185.7 million increase in accounts receivable due to the launch of ELEVIDYS and an increase in the demand of our PMO Products; • $147.7 million increase in inventory primarily due to capitalized inventory related to ELEVIDYS; • $86.8 million decrease in deferred revenue primarily related to the collaboration with Roche; • $50.1 million decrease in accounts payable, accrued expenses, lease liabilities and other liabilities, primarily due to the $54.0 million shortfall payment to Thermo and payments to Catalent for raw materials in 2023 and the overall timing and invoicing of payments; and • $12.5 million increase in manufacturing-related deposits and prepaids primarily due to the timing and usage of manufacturing prepaids.
The cost of sales (excluding amortization of in-licensed rights) for 2023 increased $10.4 million, or 7%, compared with 2022.
The cost of sales (excluding amortization of in-licensed rights) for 2024 increased by $168.8 million, or 112%, compared with 2023.
Selling, general and administrative expenses Selling, general and administrative expenses consist of salaries, benefits, stock-based compensation and related costs for personnel in our executive, finance, legal, information technology, business development, human resources, commercial and other general and administrative functions.
This was partially offset by a decrease in clinical supply costs due to timing for our SRP-9001 gene therapy programs. Selling, general and administrative expenses Selling, general and administrative expenses consist of salaries, benefits, stock-based compensation and related costs for personnel in our executive, finance, legal, information technology, business development, human resources, commercial and other general and administrative functions.
The exchange was not pursuant to the conversion privileges included in the terms of the debt at issuance and therefore was accounted for as a debt extinguishment.
The exchange was not pursuant to the conversion privileges included in the terms of the debt at issuance and, therefore, was accounted for as a debt extinguishment, resulting in a recognition of an extinguishment loss of $387.3 million for 2023. There was no similar activity in 2024.
Payments under these agreements generally become due and payable upon achievement of certain development, regulatory or commercial milestones. Because the achievement of these milestones is not probable and payment is not required as of December 31, 2023, such contingencies have not been recorded in our consolidated financial statements.
Because the achievement of these milestones is not probable and payment is not required as of December 31, 2024, such contingencies have not been recorded in our consolidated financial statements.
The following table summarizes the components of our cost of sales for the periods indicated: For the Year Ended December 31, 2023 2022 Change Change (in thousands) $ % Inventory costs related to products sold (excluding products sold to Roche**) $ 108,988 $ 95,765 $ 13,223 14 % Royalty payments 39,537 44,224 (4,687 ) (11 )% Inventory costs related to products sold to Roche** 1,818 — 1,818 NM* Total cost of sales (excluding amortization of in-licensed rights) $ 150,343 $ 139,989 $ 10,354 7 % * NM: not meaningful ** See above for further details regarding product supply sold to Roche via contract manufacturing under our Collaboration Agreement.
The following table summarizes the components of our cost of sales (excluding amortization of in-licensed rights) for the periods indicated: For the Year Ended December 31, 2024 2023 Change Change (in thousands) $ % Inventory costs related to products sold (excluding products sold to Roche**) $ 249,108 $ 108,988 $ 140,120 129 % Royalty payments 47,744 39,537 8,207 21 % Inventory costs related to products sold to Roche** 22,247 1,818 20,429 NM* Total cost of sales (excluding amortization of in-licensed rights) $ 319,099 $ 150,343 $ 168,756 112 % * NM: not meaningful ** See above for further details regarding product supply sold to Roche via contract manufacturing under the Roche Agreement.
In addition, in accordance with our Collaboration Agreement with Roche, the parties agreed to enter into a supply agreement in order for Sarepta to supply Roche with clinical and commercial batches of ELEVIDYS (the “Supply Agreement”).
In accordance with the Roche Agreement, the parties agreed to enter into a supply agreement in order for us to supply Roche with clinical and commercial batches of ELEVIDYS (the “Supply Agreement”). Roche utilizes the supply for sales of ELEVIDYS in territories outside of the U.S where Roche has received certain approvals for ELEVIDYS.
For more information, please read Note 3, License and Collaboration Agreements . Collaboration and other revenues primarily relate to our collaboration arrangement with Roche. For both 2023 and 2022, we recognized $89.2 million of collaboration revenue, related to the amortization of performance obligations. For more information, please read Note 3, License and Collaboration Agreements .
For more information, please read Note 3, License and Collaboration Agreements . Collaboration and other revenues relate to our collaboration arrangement with Roche. For 2024 and 2023, we recognized $114.0 million and $98.5 million of collaboration and other revenues, respectively.
Expense incurred related to excess inventory, obsolete inventory, or inventories that do not meet our quality specifications is recorded as a component of cost of sales in the consolidated statements of operations. Income Tax We recognize the effect of income tax positions only if those positions are more likely than not of being sustained upon an examination.
Expense incurred related to excess - 72 - inventory, obsolete inventory, or inventories that do not meet our quality specifications is recorded as a component of cost of sales in the consolidated statements of comprehensive income (loss).
(2) Lease obligations only include real estate leases that had commenced prior to December 31, 2023. (3) The leases embedded in a certain supply agreement are included in manufacturing obligations.
(2) Lease obligations only include real estate leases that had commenced prior to December 31, 2024. (3) The leases embedded in a certain supply agreement are included in manufacturing obligations. The increase in short-term manufacturing commitments is primarily driven by ramp-up of ELEVIDYS manufacturing activities as a result of anticipated increase in demand.
To the extent there are material differences between these estimates and actual results, our consolidated financial statements will be affected. Although we believe that our judgments and estimates are appropriate, actual results may differ from these estimates.
We believe that the estimates and judgments upon which we rely are reasonable based upon historical experience and information available to us at the time that we make these estimates and judgments. To the extent there are material differences between these estimates and actual results, our consolidated financial statements will be affected.
We capitalize inventory costs associated with products following regulatory approval when future commercialization is considered probable and the future economic benefit is expected to be realized.
Inventory Valuation Inventories are stated at the lower of cost and net realizable value with cost determined on a first-in, first-out basis. We capitalize inventory costs associated with products following regulatory approval when future commercialization is considered probable and the future economic benefit is expected to be realized.
These amounts were partially offset by the following: • $147.6 million increase in accounts payable, accrued expenses, lease liabilities and other liabilities due to the timing and invoicing of payments; and • $14.6 million decrease in other assets primarily due to the release of manufacturing deposits and amortization of prepaids primarily related to SRP-9001 batch production.
These amounts were partially offset by a $110.6 million increase in accounts payable, accrued expenses, lease liabilities and other liabilities primarily due to the timing and invoicing of payments with our CROs and CMOs.
The most advanced of our LGMD product candidates, SRP-9003, is designed to transfer a gene that codes for and restores beta-sarcoglycan protein with the goal of restoring the dystrophin associated protein complex. It utilizes the AAVrh.74 vector system, the same vector used in our SRP-9001 gene therapy program.
SRP-9003 is designed to transfect a gene that codes for and restores beta-sarcoglycan protein with the goal of restoring the dystrophin associated protein complex. SRP-9003 has generated positive pre-clinical safety and efficacy data utilizing the AAVrh.74 vector, the same vector used in our SRP-9001 gene therapy program. A Phase 1/2a trial of SRP-9003 commenced in the fourth quarter of 2018.
While the Supply Agreement is in the process of being negotiated, we delivered several batches of commercial ELEVIDYS supply to Roche that were agreed upon on a purchase order-by-purchase order basis. In 2023, we recognized $9.2 million of contract manufacturing collaboration revenue related to these shipments, with no similar activity for 2022.
We are eligible to receive royalties on these sales. While the Supply Agreement is in the process of being negotiated, we delivered batches of commercial ELEVIDYS supply to Roche that were agreed upon on a purchase order-by-purchase order basis.
ELEVIDYS is contraindicated in patients with any deletion in exon 8 and/or exon 9 in the Duchenne gene. We are in the process of conducting various clinical trials for our approved products, including studies that are required to comply with our post-marketing FDA requirements/commitments to verify and describe the clinical benefit of these products.
We are in the process of conducting various clinical trials for our approved products, including studies that are required to comply with our post-marketing FDA requirements/commitments to verify and describe the clinical benefit of these products. - 71 - A summary description of our key product candidates, including those in collaboration with our strategic partners, is as follows: • SRP-9003 (LGMD, gene therapy program) .
Other income (expense), net Other income (expense), net primarily consists of interest expense on our debt facilities, interest income on our cash, cash equivalents and investments, amortization of investment premium or accretion of investment discount, unrealized gains or losses or an impairment of our strategic investments and gains or losses on contingent consideration, net related to regulatory-related contingent payments meeting the definition of a derivative.
Other income (expense), net Other income (expense), net primarily consists of interest expense on our debt instruments, interest income on our cash, cash equivalents and investments, amortization of investment premium or accretion of investment discount, unrealized gain or loss from our investment in our strategic investments, the changes in the fair value of the derivative assets associated with the capped call options for our convertible senior notes due on November 15, 2024 (the “2024 Notes”) and the changes in the fair value of contingent consideration related to regulatory-related contingent payments meeting the definition of a derivative liability.
The calculation of our tax liabilities (or amount of reduction in our deferred tax assets from net operating loss carryover and research credit carryover) resulting from uncertain tax positions can involve significant judgment. Further, the calculation may involve the application of complex tax regulations in a foreign jurisdiction.
We recognize the effect of income tax positions only if those positions are more likely than not of being sustained upon an examination. The calculation of our tax liabilities (or amount of reduction in our deferred tax assets from net operating loss carryover and research credit carryover) resulting from uncertain tax positions can involve significant judgment.
Interest expense primarily includes interest accrued on our convertible notes. Our cash equivalents and investments consist of money market funds, corporate bonds, commercial paper, government and government agency debt securities and certificates of deposit. Other income (expense), net for 2023 increased by approximately $61.4 million compared to 2022.
Our cash equivalents and investments consist of money market funds, corporate bonds, government and government agency debt securities and certificates of deposit. Other income, net for 2024 increased by approximately $9.6 million compared to 2023. The change is primarily due to the impairment of a strategic investment during 2023, with no similar activity during 2024.
Income tax expense Income tax expense for 2023 and 2022 was approximately $15.9 million and $13.5 million, respectively. Income tax expense for 2023 relates to state, foreign and federal taxes, while income tax expense for 2022 relates to state and foreign income taxes.
There was no similar activity in 2024. Income tax expense - 78 - Income tax expense for 2024 and 2023 was approximately $25.5 million and $15.9 million, respectively. Income tax expense for 2024 and 2023 relates to state, foreign and federal taxes for which available tax losses or credits were not available to offset.
Cash used in investing activities in 2022 primarily consisted of purchases of available-for-sale securities and property and equipment of $1,936.9 million and $30.8 million, respectively, partially offset by proceeds of $923.2 million from the maturity of available-for-sale securities. Financing Activities Cash provided by financing activities was $125.0 million in 2023 compared to $232.5 million in 2022.
Cash provided by investing activities in 2024 consisted of $2,002.1 million from the maturity and sales of available-for-sale securities, partially offset by purchases of available-for-sale securities, property and equipment and intangible assets of $1,099.6 million, $137.0 million and $10.0 million, respectively.
We believe the following accounting policies to be most critical to the judgments and estimates used in the preparation of our consolidated financial statements: • inventory; and - 74 - • income tax. Inventory Valuation Inventories are stated at the lower of cost and net realizable value with cost determined on a first-in, first-out basis.
Although we believe that our judgments and estimates are appropriate, actual results may differ from these estimates. We believe the following accounting policies to be most critical to the judgments and estimates used in the preparation of our consolidated financial statements: • inventory; and • income tax.
Please read Note 2, Summary of Significant Accounting Policies to the consolidated financial statements included elsewhere in this Annual Report on Form 10-K for a further discussion of our critical accounting policies and estimates. - 75 - The following table sets forth selected consolidated statements of operations data for each of the periods indicated: For the Year Ended December 31, 2023 2022 Change Change (in thousands, except per share amounts) $ % Revenues: Products, net $ 1,144,876 $ 843,769 $ 301,107 36 % Collaboration and other 98,460 89,244 9,216 10 % Total revenues 1,243,336 933,013 310,323 33 % Cost and expenses: Cost of sales (excluding amortization of in-licensed rights) 150,343 139,989 10,354 7 % Research and development 877,387 877,090 297 (— )% Selling, general and administrative 481,871 451,421 30,450 7 % Amortization of in-licensed rights 1,559 714 845 118 % Total cost and expenses 1,511,160 1,469,214 41,946 3 % Operating loss (267,824 ) (536,201 ) 268,377 (50 )% Other loss, net: Loss on debt extinguishment (387,329 ) (125,441 ) (261,888 ) 209 % Gain from sale of Priority Review Voucher 102,000 — 102,000 NM* Other income (expense), net 33,055 (28,321 ) 61,376 217 % Total other loss, net (252,274 ) (153,762 ) (98,512 ) (64 )% Loss before income tax expense (520,098 ) (689,963 ) 169,865 25 % Income tax expense 15,879 13,525 2,354 17 % Net loss $ (535,977 ) $ (703,488 ) $ 167,511 24 % Net loss per share — basic and diluted $ (5.80 ) $ (8.03 ) $ 2.23 28 % * NM: not meaningful Revenues The following table summarizes the components of our net product revenues by product for the periods indicated: For the Year Ended December 31, 2023 2022 Change Change (in thousands) $ % EXONDYS 51 $ 540,576 $ 511,749 $ 28,827 6 % AMONDYS 45 273,755 214,582 59,173 28 % ELEVIDYS 200,356 — 200,356 NM* VYONDYS 53 130,189 117,438 12,751 11 % Products, net $ 1,144,876 $ 843,769 $ 301,107 36 % * NM: not meaningful Net product revenues for our products for 2023 increased by $301.1 million compared with 2022.
Please read Note 2, Summary of Significant Accounting Policies and Recent Accounting Pronouncements to the consolidated financial statements, included elsewhere in this Annual Report on Form 10-K, for a further discussion of our critical accounting policies and estimates. - 73 - The following table sets forth selected consolidated statements of income (loss) data for each of the periods indicated: For the Year Ended December 31, 2024 2023 Change Change (in thousands, except per share amounts) $ % Revenues: Products, net $ 1,787,960 $ 1,144,876 $ 643,084 56 % Collaboration and other 114,019 98,460 15,559 16 % Total revenues 1,901,979 1,243,336 658,643 53 % Cost and expenses: Cost of sales (excluding amortization of in-licensed rights) 319,099 150,343 168,756 112 % Research and development 804,522 877,387 (72,865 ) (8 )% Selling, general and administrative 557,872 481,871 76,001 16 % Amortization of in-licensed rights 2,405 1,559 846 54 % Total cost and expenses 1,683,898 1,511,160 172,738 11 % Operating income (loss) 218,081 (267,824 ) 485,905 NM* Other income (loss), net: Other income, net 42,693 33,055 9,638 29 % Loss on debt extinguishment — (387,329 ) 387,329 (100 )% Gain from sale of Priority Review Voucher — 102,000 (102,000 ) (100 )% Total other income (loss), net 42,693 (252,274 ) 294,967 NM* Income (loss) before income tax expense 260,774 (520,098 ) 780,872 NM* Income tax expense 25,535 15,879 9,656 61 % Net income (loss) $ 235,239 $ (535,977 ) $ 771,216 NM* Earnings (loss) per share: Basic $ 2.47 $ (5.80 ) $ 8.27 NM* Diluted $ 2.34 $ (5.80 ) $ 8.14 NM* * NM: not meaningful Revenues The following table summarizes the components of our net product revenues, by product, for the periods indicated: For the Year Ended December 31, 2024 2023 Change Change (in thousands) $ % PMO Products $ 967,169 $ 944,520 $ 22,649 2 % ELEVIDYS 820,791 200,356 620,435 NM* Products, net $ 1,787,960 $ 1,144,876 $ 643,084 56 % * NM: not meaningful Net product revenues for our products for 2024 increased by $643.1 million, or 56%, compared with 2023.
Research and development expenses Research and development expenses consist of costs associated with research activities as well as those associated with our product development efforts, conducting pre-clinical trials, clinical trials and manufacturing activities.
For 2024 and 2023, we recognized $22.2 million and $1.8 million, respectively, of cost of sales related to products sold to Roche under the Roche Agreement. - 75 - Research and development expenses Research and development expenses consist of costs associated with research activities as well as those associated with our product development efforts, conducting pre-clinical trials, clinical trials and manufacturing activities.
Refer to Note 18, Income Taxes for discussion of the key drivers impacting our effective tax rate. - 80 - Liquidity and Capital Resources The following table summarizes our financial condition for each of the periods indicated: For the Year Ended December 31, 2023 2022 Change Change (in thousands) $ % Financial assets: Cash and cash equivalents $ 428,430 $ 966,777 $ (538,347 ) (56 )% Short-term investments 1,247,820 1,022,597 225,223 22 % Restricted cash 15,579 19,024 (3,445 ) (18 )% Total cash, cash equivalents and investments $ 1,691,829 $ 2,008,398 $ (316,569 ) (16 )% Borrowings: Convertible debt $ 1,237,998 $ 1,544,292 $ (306,294 ) (20 )% Total borrowings $ 1,237,998 $ 1,544,292 $ (306,294 ) (20 )% Working capital Current assets $ 2,579,331 $ 2,557,861 $ 21,470 1 % Current liabilities 653,659 619,604 34,055 5 % Total working capital $ 1,925,672 $ 1,938,257 $ (12,585 ) (1 )% For 2023 and 2022, our principal sources of liquidity were primarily derived from sales of our products, net proceeds from sale of the ELEVIDYS PRV, net proceeds from our offering of the 2027 Notes, proceeds from the partial settlement of capped call options associated with the 2024 Notes Exchange and our collaboration arrangement with Roche.
Liquidity and Capital Resources The following table summarizes our financial condition for each of the periods indicated: For the Year Ended December 31, 2024 2023 Change Change (in thousands) $ % Financial assets: Cash and cash equivalents $ 1,103,010 $ 428,430 $ 674,580 157 % Short-term investments 251,782 1,247,820 (996,038 ) (80 )% Non-current investments 133,163 — 133,163 NM* Restricted cash 15,579 15,579 — (— )% Total cash, cash equivalents and investments $ 1,503,534 $ 1,691,829 $ (188,295 ) (11 )% Borrowings: Convertible debt $ 1,137,124 $ 1,237,998 $ (100,874 ) (8 )% Total borrowings $ 1,137,124 $ 1,237,998 $ (100,874 ) (8 )% Working capital Current assets $ 3,073,463 $ 2,579,331 $ 494,132 19 % Current liabilities 731,684 653,659 78,025 12 % Total working capital $ 2,341,779 $ 1,925,672 $ 416,107 22 % For 2024 and 2023, our principal sources of liquidity were primarily derived from sales of our products, net proceeds from sale of the ELEVIDYS PRV, proceeds from the settlement of capped call options associated with the 2024 Notes (the “2017 Capped Calls”) and our collaboration arrangement with Roche.
The Exchange Agreements resulted in an exchange of $313.5 million in aggregate principal value of the 2024 Notes for shares of our common stock (the “2024 Notes Exchange”). In connection with the 2024 Notes Exchange, we issued approximately 4.5 million shares of our common stock representing an agreed upon contractual exchange rate pursuant to the terms of each Exchange Agreement.
Loss on debt extinguishment On March 2, 2023, we entered into separate, privately negotiated exchange agreements with certain holders of the outstanding 2024 Notes, which resulted in an exchange of $313.5 million in aggregate principal value of the 2024 Notes for approximately 4.5 million shares of our common stock (the “2024 Notes Exchange”).
The changes in our working capital primarily reflect use of cash in operating activities.
The changes in our working capital primarily reflect the use of cash in operating activities, as well as an increase in inventory due to the capitalization of ELEVIDYS inventory after its approval in June 2023.
The following table summarizes our selling, general and administrative expenses by category for each of the periods indicated: For the Year Ended December 31, 2023 2022 Change Change (in thousands) $ % Professional services $ 158,279 $ 97,330 $ 60,949 63 % Compensation and other personnel expenses 157,317 122,127 35,190 29 % Stock-based compensation 100,025 171,725 (71,700 ) (42 )% Facility- and technology-related expenses 44,090 33,156 10,934 33 % Other 23,031 27,618 (4,587 ) (17 )% Roche collaboration reimbursement (871 ) (535 ) (336 ) 63 % Total selling, general and administrative expenses $ 481,871 $ 451,421 $ 30,450 7 % Selling, general and administrative expenses for 2023 increased by $30.5 million, or 7%, compared with 2022.
The following table summarizes our selling, general and administrative expenses by category for each of the periods indicated: For the Year Ended December 31, 2024 2023 Change Change (in thousands) $ % Professional services $ 183,505 $ 158,279 $ 25,226 16 % Compensation and other personnel expenses 171,508 157,317 14,191 9 % Stock-based compensation 110,290 100,025 10,265 10 % Facility- and technology-related expenses 50,903 44,090 6,813 15 % Other 43,093 23,031 20,062 87 % Roche collaboration reimbursement (1,427 ) (871 ) (556 ) 64 % Total selling, general and administrative expenses $ 557,872 $ 481,871 $ 76,001 16 % - 77 - Selling, general and administrative expenses for 2024 increased by $76.0 million, or 16%, compared with 2023.
The preparation of our consolidated financial statements in accordance with accounting principles generally accepted in the U.S. requires us to make estimates and judgments that affect the reported amounts of assets, liabilities, revenues and expenses and related disclosure of contingent assets and liabilities for the periods presented.
GAAP requires us to make estimates and judgments that affect the reported amounts of assets, liabilities, revenues and expenses and related disclosure of contingent assets and liabilities for the periods presented. Some of these judgments can be subjective and complex, and, consequently, actual results may differ from these estimates.
The net cash outflow from changes in our operating assets and liabilities was primarily driven by the following: • $89.2 million decrease in deferred revenue related to the collaboration with Roche; • $61.6 million increase in accounts receivable, net due to an increase in demand for our PMO products; and • $50.8 million increase in inventory due to our continuing build-up of inventory purchased in 2022 as the demand for our PMO products increased.
The net cash outflow from changes in our operating assets and liabilities was primarily driven by the following: • $395.2 million increase in inventory primarily due to capitalized inventory related to ELEVIDYS; • $201.7 million increase in accounts receivable due to an increase in demand for ELEVIDYS following its initial FDA approval in June 2023 and subsequent expanded label approval in June 2024 and an increase in payment terms for product sales related to the PMO Products; • $188.6 million increase in manufacturing-related deposits and prepaids primarily due to an increase in prepaids for raw materials and batch fees with Catalent, partially offset by decreases in manufacturing-related deposits and prepaids at Thermo as a result of the termination of the Thermo Agreement during 2024; and • $32.2 million decrease in deferred revenue primarily related to the collaboration with Roche.
Cash Flows The following table summarizes our cash flow activity for each of the periods indicated: For the Year Ended December 31, 2023 2022 Change Change (in thousands) $ % Cash (used in) provided by Operating activities $ (500,993 ) $ (325,346 ) $ (175,647 ) 54 % Investing activities (165,803 ) (1,046,883 ) 881,080 (84 )% Financing activities 125,004 232,507 (107,503 ) (46 )% Decrease in cash and cash equivalents $ (541,792 ) $ (1,139,722 ) $ 597,930 (52 )% Operating Activities Cash used in operating activities, which consists of our net loss adjusted for non-cash items and changes in net operating assets and liabilities, totaled $501.0 million in 2023.
Amounts related to contingent milestone payments are not yet considered contractual obligations as they are contingent on the successful achievement of certain development, regulatory approval and commercial milestones. - 80 - Cash Flows The following table summarizes our cash flow activity for each of the periods indicated: For the Year Ended December 31, 2024 2023 Change Change (in thousands) $ % Cash (used in) provided by Operating activities $ (205,787 ) $ (500,993 ) $ 295,206 (59 )% Investing activities 755,561 (165,803 ) 921,364 NM* Financing activities 124,806 125,004 (198 ) (— )% Increase (decrease) in cash and cash equivalents $ 674,580 $ (541,792 ) $ 1,216,372 (225 )% * NM: not meaningful Operating Activities Cash used in operating activities, which consists of our net income (loss) adjusted for non-cash items and changes in net operating assets and liabilities, totaled $205.8 million and $501.0 million of cash in 2024 and 2023, respectively.
The following table summarizes our total obligations under debt, lease, and manufacturing arrangements: As of December 31, 2023 Due in less than one year Due in greater than one year Total (in thousands) Debt obligations (1) $ 121,810 $ 1,193,125 $ 1,314,935 Lease obligations (2) 26,432 336,011 362,443 Manufacturing obligations (3) 1,032,159 407,671 1,439,830 Total obligations under debt, lease and manufacturing arrangements $ 1,180,401 $ 1,936,807 $ 3,117,208 (1) Interest payments are included within the future debt obligations.
The following table summarizes our total obligations under debt, lease, and manufacturing arrangements: As of December 31, 2024 Due in less than one year Due in greater than one year Total (in thousands) Debt obligations (1) $ 14,375 $ 1,178,750 $ 1,193,125 Lease obligations (2) 24,396 328,762 353,158 Manufacturing obligations (3) 943,067 293,434 1,236,501 Total obligations under debt, lease and manufacturing arrangements $ 981,838 $ 1,800,946 $ 2,782,784 (1) Interest payments are included within the future debt obligations.
The increase is primarily due to a $38.5 million increase in accretion of investment discount, net and a $19.8 million increase in interest income due to the investment mix of our investment portfolio and an increase in interest rates, as well as a $31.2 million reduction of interest expense incurred as a result of the repayment of our December 2019 Term Loan in 2022, partially offset by a $27.7 million increase in the impairment of strategic investments and a $7.9 million decrease in gain (loss) on contingent consideration, net.
This change was partially offset by a decrease in interest income and accretion of investment discount, net as a result of lower interest rates and the investment mix of our investment portfolio and an increase in the fair value of derivatives, primarily related to contingent consideration.
This was primarily driven by the following: • $60.9 million increase in professional service expenses primarily related to the launch of ELEVIDYS and ongoing litigation matters; • $35.2 million increase in compensation and other personnel expenses primarily due to changes in headcount; • $71.7 million decrease in stock-based compensation expense primarily related to the execution of the Chief Executive Officer grant modification agreement in 2022, partially offset by the achievement of performance conditions related to certain PSUs in 2023 with continuing vesting requirements related to a service condition, as well as changes in headcount and the value of stock awards; • $10.9 million increase in facility- and technology-related expenses primarily due to our continuing expansion efforts; and • $4.6 million decrease in other expenses primarily related to timing of charitable contributions. - 79 - Amortization of in-licensed rights Amortization of in-licensed rights relates to the agreements we entered into with UWA, Nationwide, BioMarin and Parent Project Muscular Dystrophy in April 2013, December 2016, July 2017 and May 2018, respectively.
The increase was primarily driven by the following: • $25.2 million increase in professional service expenses primarily related to ongoing litigation matters, our continuing expansion efforts and continuing efforts to commercialize ELEVIDYS; • $14.2 million increase in compensation and other personnel expenses primarily due to changes in headcount; • $10.3 million increase in stock-based compensation expense primarily related to the achievement of performance conditions related to certain PSUs during the year ended December 31, 2024 and changes in headcount; • $6.8 million increase in facility- and technology-related expenses primarily due to our continuing expansion efforts; and • $20.1 million increase in other expenses primarily due to the timing of charitable contribution activity.
The change primarily reflects increasing demand for our PMO products, partially offset by a decrease in write-offs of certain batches of our products not meeting our quality specifications in 2023, as compared to 2022, as well as a decrease in royalty payments due to changes in the BioMarin royalty terms.
The change primarily reflects an increase in cost of sales related to ELEVIDYS due to an increase in demand following its initial FDA approval in June 2023 and subsequent expanded label approval in June 2024, as well as increases in the write-offs of certain batches of our products not meeting our quality specifications.
The increase primarily reflects increasing demand for EXONDYS 51, AMONDYS 45 and VYONDYS 53 (collectively, the “PMO Products”), as well as $200.4 million of net product revenues associated with sales of ELEVIDYS for 2023 after its approval in June 2023.
The increase primarily reflects an increase in net product revenues of ELEVIDYS of $620.4 million in 2024 as a result of its initial FDA approval in June 2023 and subsequent expanded label approval in June 2024.
The following table summarizes our research and development expenses by project for each of the periods indicated: For the Year Ended December 31, 2023 2022 Change Change (in thousands) $ % SRP-9001 $ 282,207 $ 424,210 $ (142,003 ) (33 )% Eteplirsen (exon 51) 90,829 46,100 44,729 97 % PPMO platform 78,231 50,026 28,205 56 % LGMD platform 58,529 27,949 30,580 109 % Other gene therapies 29,411 53,834 (24,423 ) (45 )% Casimersen (exon 45) 21,264 31,850 (10,586 ) (33 )% Golodirsen (exon 53) 16,556 14,707 1,849 13 % Up-front, milestone, and other expenses 13,232 35,102 (21,870 ) (62 )% Gene editing 12,177 10,537 1,640 16 % Other projects 10,288 6,026 4,262 71 % Internal research and development expenses 370,677 294,021 76,656 26 % Roche collaboration reimbursement (106,014 ) (117,272 ) 11,258 (10 )% Total research and development expenses $ 877,387 $ 877,090 $ 297 (— )% The following table summarizes our research and development expenses by category for each of the periods indicated: For the Year Ended December 31, 2023 2022 Change Change (in thousands) $ % Manufacturing expenses $ 302,025 $ 445,758 $ (143,733 ) (32 )% Clinical trial expenses 187,289 135,838 51,451 38 % Compensation and other personnel expenses 187,224 148,385 38,839 26 % Facility- and technology-related expenses 103,434 85,093 18,341 22 % Stock-based compensation 82,489 61,293 21,196 35 % Professional services 28,962 19,264 9,698 50 % Up-front, milestone, and other expenses 13,232 35,102 (21,870 ) (62 )% Pre-clinical expenses 11,838 8,704 3,134 36 % Research and other 66,908 54,925 11,983 22 % Roche collaboration reimbursement (106,014 ) (117,272 ) 11,258 (10 )% Total research and development expenses $ 877,387 $ 877,090 $ 297 (— )% Research and development expenses for 2023 slightly increased by $0.3 million, compared with 2022.
The following table summarizes our research and development expenses, by project, for each of the periods indicated: For the Year Ended December 31, 2024 2023 Change Change (in thousands) $ % SRP-9001 $ 307,564 $ 282,207 $ 25,357 9 % LGMD platform 99,122 58,529 40,593 69 % Eteplirsen (exon 51) 70,213 90,829 (20,616 ) (23 )% Other gene therapies 33,272 29,411 3,861 13 % PPMO platform 31,926 78,231 (46,305 ) (59 )% Gene editing 14,853 12,177 2,676 22 % Casimersen (exon 45) 14,805 21,264 (6,459 ) (30 )% Golodirsen (exon 53) 10,062 16,556 (6,494 ) (39 )% Other projects 9,064 23,520 (14,456 ) (61 )% Internal research and development expenses 339,321 370,677 (31,356 ) (8 )% Roche collaboration reimbursement (125,680 ) (106,014 ) (19,666 ) 19 % Total research and development expenses $ 804,522 $ 877,387 $ (72,865 ) (8 )% The following table summarizes our research and development expenses by category for each of the periods indicated: For the Year Ended December 31, 2024 2023 Change Change (in thousands) $ % Manufacturing expenses* $ 329,011 $ 345,826 $ (16,815 ) (5 )% Compensation and other personnel expenses 164,322 161,763 2,559 2 % Clinical trial expenses 163,565 187,289 (23,724 ) (13 )% Facility- and technology-related expenses 90,697 87,307 3,390 4 % Stock-based compensation 74,010 82,489 (8,479 ) (10 )% Professional services 30,640 26,749 3,891 15 % Pre-clinical expenses 6,359 11,838 (5,479 ) (46 )% Research and other 71,598 80,140 (8,542 ) (11 )% Roche collaboration reimbursement (125,680 ) (106,014 ) (19,666 ) 19 % Total research and development expenses $ 804,522 $ 877,387 $ (72,865 ) (8 )% *Beginning in 2024, we implemented an updated manufacturing absorption methodology that allocates the absorption of indirect manufacturing costs to their respective originating categories.
Prior to receiving regulatory approval for EXONDYS 51, VYONDYS 53, AMONDYS 45 and ELEVIDYS by the FDA in September 2016, December 2019, February 2021 and June 2023, respectively, we expensed such manufacturing and material costs as research and development expenses.
Prior to receiving regulatory approval for our products, we expensed manufacturing and material costs as research and development expenses. For the PMO Products, all previously expensed manufacturing costs had been fully consumed prior to 2023. For ELEVIDYS sold in 2024, a portion of related manufacturing costs incurred had previously been expensed as research and development expenses.
Investing Activities Cash used in investing activities for 2023 and 2022 were $165.8 million and $1,046.9 million, respectively.
Investing Activities Cash provided by investing activities for 2024 was $755.6 million, while cash used by investing activities for 2023 was $165.8 million.
Cash used in operating activities in 2022 was primarily driven by the net loss of $703.5 million, adjusted for following: • $233.0 million in stock-based compensation expense; • $125.4 million in loss on debt extinguishment of the 2024 Notes and 2019 Term Loan; • $41.9 million in depreciation and amortization expense; and • $27.9 million in other non-cash items.
Cash used in operating activities in 2024 was primarily driven by the net income of $235.2 million, adjusted for the following non-cash items: • $184.3 million in stock-based compensation expense; • $62.7 million in non-cash termination charges as a result of the Thermo Agreement termination; • $37.7 million in depreciation and amortization expense; • $16.2 million reduction in the carrying amount of the right of use assets; • $7.8 million charge related to the change in the fair value of derivatives; and • $7.1 million in other non-cash items.
Cash provided by financing activities in 2022 primarily consisted of the following: • $1,127.4 million in proceeds from the 2027 Notes offering, net of commissions; • $30.0 million in proceeds from exercise of options and purchase of stock under our Employee Stock Purchase Program; and • $26.3 million in partial settlement of capped call share options for the 2024 Notes. - 83 - These amounts were partially offset by the following items: • $550.0 million for the repayment of the 2019 Term Loan; • $247.9 million in the repurchase of a portion of the 2024 Notes; • $127.3 million purchase of capped call share options for the 2027 Notes; and • $25.4 million for payment on the debt extinguishment of the 2019 Term Loan.
Financing Activities Cash provided by financing activities was $124.8 million in 2024, compared to $125.0 million in 2023. Cash provided by financing activities in 2024 primarily consisted of $79.5 million in proceeds from exercise of options and purchase of stock under our Employee Stock Purchase Program and $45.3 million in proceeds from the settlement of the 2017 Capped Calls.